DISEASE GUIDE

Nosema Disease: The Silent Gut Infection Weakening Your Bees

Nosema is one of the most common adult bee diseases worldwide—and one of the hardest to detect. Learn to recognize the subtle signs and protect your colonies.

Updated: December 2025 12 min read

⚠️ Why Nosema Matters

Nosema infection shortens bee lifespan by 50% or more, reduces honey production, impairs queen fertility, and is linked to increased winter losses. Unlike dramatic diseases with obvious symptoms, Nosema quietly weakens colonies until they fail—often mistakenly attributed to other causes.

🔑 Key Takeaways

In This Guide

If you've lost colonies over winter and couldn't figure out why, there's a good chance Nosema was involved. This microsporidian gut parasite infects adult bees worldwide and is implicated in colony losses ranging from gradual decline to sudden spring "dwindling." The challenge? Infected colonies often look normal until it's too late.

What Is Nosema?

Nosema is a fungal gut parasite (technically a microsporidian) that infects the midgut lining of adult honey bees. When bees ingest Nosema spores—typically through contaminated food, water, or by cleaning infected comb—the spores germinate in the gut and begin reproducing inside the cells lining the digestive tract.

The infection damages the bee's ability to digest food and absorb nutrients. Infected bees:

Because the infection is internal and symptoms are often subtle, heavily infected colonies can appear "normal" during inspections while actually declining rapidly.

Two Species: N. apis vs N. ceranae

There are two Nosema species that infect Western honey bees, and they behave quite differently:

Characteristic Nosema apis Nosema ceranae
Origin European honey bee (native) Asian honey bee (jumped hosts ~2005)
Seasonality Spring peak (after long confinement) Year-round, especially summer
Classic Symptom Dysentery (fecal streaking) Often asymptomatic ("dry nosema")
Temperature Thrives in cool/cold weather Thrives in warm weather
Spore Survival Years in comb (cold-tolerant) Less persistent outside host
Prevalence Today Declining (in most regions) Dominant worldwide
Mortality Pattern Gradual weakening Can cause rapid colony collapse

The important takeaway: N. ceranae is now the dominant species in most of the world, and it's harder to detect because infected bees often don't show the classic dysentery symptoms associated with traditional Nosema disease. Colonies can carry heavy infections while looking superficially healthy.

⚠️ The "Dry Nosema" Problem

N. ceranae infections often progress without the telltale fecal streaking of classic Nosema. Beekeepers who look for dysentery as their only Nosema indicator will miss most N. ceranae infections entirely. This is why microscopic examination or lab testing is essential for accurate diagnosis.

Signs & Symptoms

Nosema symptoms range from obvious to nearly invisible. Here's what to watch for:

Classic Symptoms (More Common with N. apis)

🔴

Dysentery / Fecal Streaking

Brown or yellow streaks on hive entrance, landing board, frames, and inside the hive. Healthy bees defecate only during flight—streaking inside the hive indicates digestive distress.

🔴

Crawling Bees

Bees unable to fly, crawling on the ground in front of the hive with distended abdomens. Often trembling or appearing disoriented.

🔴

Spring Dwindling

Colony that survives winter but fails to build up in spring. Population declines despite available food and good weather.

Subtle Symptoms (Common with N. ceranae)

🟡

Poor Buildup Despite Good Conditions

Colony doesn't grow as expected even with adequate food, warm weather, and a laying queen.

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Reduced Honey Production

Foragers are less efficient; colony produces less honey than expected for its apparent population.

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Queen Failure / Supersedure

Queens with Nosema infection have shorter lifespans and reduced fertility. Multiple supersedure attempts may indicate underlying infection.

🟡

Weakened Winter Cluster

Colony enters winter looking adequate but dies mid-winter or emerges severely depleted.

💡 The Trap for Beekeepers

Many of these symptoms overlap with other problems: varroa mite damage, poor nutrition, pesticide exposure, or simply a failing queen. Without testing, it's impossible to know if Nosema is the cause, a contributing factor, or not involved at all. This is why testing matters.

How to Diagnose Nosema

Visual symptoms are suggestive but not diagnostic. The only way to confirm Nosema infection is to look for spores under a microscope or send samples to a diagnostic lab.

DIY Microscopic Examination

If you have access to a compound microscope (400x magnification), you can check for Nosema spores yourself:

  1. Collect sample: Capture 20-30 older forager bees from the hive entrance (foragers have highest spore loads).
  2. Remove abdomens: Pull off the abdomens and place them in a ziplock bag or small container.
  3. Crush and dilute: Add 1 mL of water per bee abdomen. Crush thoroughly to create a suspension.
  4. Prepare slide: Place a drop of the suspension on a microscope slide, add coverslip.
  5. Examine at 400x: Look for oval, rice-grain-shaped spores. They're highly refractive (appear bright/shiny).

🔬 What You're Looking For

Nosema spores are oval, approximately 4-6 microns long, and appear as bright, refractile bodies under phase contrast or brightfield microscopy. They look like tiny rice grains. A heavy infection will show many spores per field of view; a light infection may show only a few.

Note: You cannot distinguish N. apis from N. ceranae visually—they look identical under standard microscopy. PCR testing is required for species identification.

Lab Testing

If you don't have a microscope, several options exist:

📦 How to Ship Bee Samples

Collect 50-100 bees from the entrance (foragers). Place in a small container with 70% alcohol (rubbing alcohol works). Label with your name, address, hive number, and date. Ship via USPS—bees preserved in alcohol can be mailed legally. Check with your state apiarist or USDA lab for specific submission instructions.

Treatment Options

Treatment options for Nosema are limited compared to other bee diseases. Here's the current landscape:

Fumagilin-B (Fumagillin)

Fumagillin is the only antibiotic approved for treating Nosema in honey bees. It's been the standard treatment for decades.

How Fumagilin-B Works

  • ✓ Inhibits spore reproduction (doesn't kill existing spores, but prevents new ones)
  • ✓ Fed in sugar syrup—bees must consume treated feed
  • ✓ Typically administered in fall (before winter confinement) or early spring
  • ✓ Must be used before honey supers are added (not for use during honey production)

⚠️ Fumagilin-B Availability Issues

Fumagilin-B has faced regulatory and supply chain challenges in recent years. In some countries (including Canada at times), it has been unavailable. In the US, it remains available but can be difficult to source. Check with beekeeping suppliers like Mann Lake or Dadant for current availability.

Alternative Approaches

Given Fumagilin-B's uncertain future, many beekeepers focus on management-based approaches:

⚠️ Be Skeptical of "Natural" Cures

You'll find many claims online about vinegar, honey-B-healthy, essential oil treatments, etc. Most of these have little or no scientific support for Nosema control. The most evidence-based approach when Fumagilin-B is unavailable is to focus on prevention and management rather than unproven remedies.

Prevention Strategies

Since treatment options are limited, prevention and management are your best tools. Here's what works:

1. Good Nutrition

Well-fed bees resist Nosema better than nutritionally stressed bees. Ensure:

2. Reduce Moisture & Improve Ventilation

Nosema spores spread through fecal contamination, which increases when bees defecate inside the hive (due to confinement and moisture). Good ventilation reduces humidity and allows cleansing flights.

3. Young Queens

Colonies with young, vigorous queens build up faster and replace infected workers more quickly. Requeen every 1-2 years, especially if you've had Nosema problems.

4. Comb Rotation

Old, dark brood comb can harbor Nosema spores. Rotate out old comb (3-5 year cycle) and replace with new foundation. This is good practice for multiple disease and pest reasons.

5. Don't Share Equipment from Infected Colonies

Nosema spores can survive on comb and equipment. If a colony dies with suspected Nosema, don't redistribute that equipment to healthy colonies without cleaning. Spores can be killed by:

6. Control Varroa Mites

Research shows that Varroa mite infestation increases Nosema severity. Bees weakened by Varroa (and the viruses mites vector) are more susceptible to Nosema infection and less able to recover. Effective mite management indirectly helps with Nosema control.

Understanding the Disease Lifecycle

Knowing how Nosema spreads helps you interrupt the cycle:

  1. 1

    Spore Ingestion

    Bee ingests spores while cleaning contaminated comb, consuming contaminated food/water, or during trophallaxis (food sharing) with infected bees.

  2. 2

    Spore Germination

    In the midgut, spores evert a polar filament that penetrates gut epithelial cells, injecting the parasite's contents.

  3. 3

    Reproduction

    The parasite multiplies inside gut cells, eventually destroying them. One spore can produce millions of new spores within 10-14 days.

  4. 4

    Spore Release

    Mature spores are released when gut cells rupture. They're shed in feces, contaminating the hive environment.

  5. 5

    Environmental Contamination

    Spores accumulate on comb, in honey stores, and on hive surfaces. House bees cleaning cells become infected, continuing the cycle.

Key insight: The cycle accelerates when bees are confined (winter, rainy periods) because they can't take cleansing flights and feces accumulates inside the hive. Spring "outbreaks" are often the culmination of winter-long spore buildup.

When to Take Action

Not every Nosema-positive colony needs intervention. Here's a decision framework:

Situation Action
Low spore count, colony thriving Monitor only. Focus on prevention measures.
Moderate spore count, colony showing symptoms Consider treatment if Fumagilin-B available. Improve nutrition and ventilation.
High spore count, poor buildup Treat if possible. Requeen. Consider combining with healthy colony if very weak.
Severe infection, colony dwindling May not be salvageable. Don't redistribute equipment to healthy colonies without decontamination.

Spore Count Thresholds

If you're doing microscopic analysis, here are general guidelines (spores per bee):

Most labs report results in these terms. Keep in mind that spore counts fluctuate seasonally—spring samples typically show higher counts than fall samples.

Living with Nosema: A Practical Approach

Nosema is endemic—it's everywhere, and most colonies carry some level of infection. The goal isn't to eliminate it entirely (that's unrealistic) but to keep infection levels low enough that colonies thrive despite it.

Here's the practical approach for most beekeepers:

  1. 1 Test periodically. Send samples to your state apiarist or USDA lab, especially if colonies are underperforming without obvious cause.
  2. 2 Focus on prevention. Good nutrition, ventilation, young queens, and comb rotation do more than any treatment.
  3. 3 Control Varroa aggressively. Mite-weakened bees are Nosema's best friend.
  4. 4 Treat with Fumagilin-B if available and warranted. Fall treatment before winter confinement is most effective timing.
  5. 5 Don't panic. Nosema is common, and most colonies manage it fine with good management. It's one factor among many affecting colony health.

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